Top San Diego On the Water

Go whale watching from San Diego aboard a replica of a historic sailing schooner that won the world’s first America’s Cup sailing competition in 1851. Throughout your cruise, your expert guide shares informative commentary about gray whales, dolphins, and other marine animals, along with details about the US Navy sites you pass as you head out on the Pacific Ocean.

Zoom around the waters of San Diego Bay on a jet boat ride that provides speed, splashes, and spins. As you race through the scenic waterway, your captain points out landmarks including the USS Midway, Coronado Island, Seaport Village, the Embarcadero, and the city skyline. Hang on as your captain takes your boat into power slides, 360-degree spins and other thrilling maneuvers—a high-octane twist on sightseeing in San Diego.

Get the best chance of seeing whales and dolphins on a private boat tour. Your party will have the run of the boat, including an enclosed cabin, an observation tower, and a restroom. Your experienced USCG-certified captain knows the best places to spot wildlife and will provide engaging commentary on the local marine ecosystem.

1 HOUR Pedal Boat Rentals. Maximum capacity 3 adults and 1 kid (650lb) Our Pedal Boats are equipped with very comfortable seating and sun shade. Cruise the San Diego Bay at your own pace while enjoying the local wildlife and sightseeing. Our boat rentals a safe boating experience for families with kids in San Diego! * Well behaved dogs are welcome

Experience the thrill of driving your own speed boat during this tour of San Diego Harbor. Learn the basics of boating from your expert guide before following your guide's boat around the harbor, cruising past highlights such as the USS Midway, a US Navy submarine, Coronado Bridge, Seaport Village, the cruise ship terminal, the historic ship Star of India and San Diego Maritime Museum. Learn from your guide about these landmarks via the onboard two-way communications system and stop for photo ops on this exciting tour.

Spend a few hours relaxing, sunbathing and sightseeing in the placid waters just off San Diego during this 1 or 2 hour San Diego Harbor cruise. Sit back and relax as you take in a fully-narrated tour, offering top-notch sight lines of the San Diego skyline, a cruise under Coronado Bridge, a look at the bustling US Naval fleet and a chance to spot some of the harbor’s resident sea lions. Choose between 1 and 2 hour cruise options, offering you two trips to fit your schedule and interests.

On this experience, relax in style aboard a luxury dinner cruise. Enjoy panoramic views from the boat's deck and take your time over a gourmet, 3-course meal, as you cruise past twinkling city lights that ring San Diego Bay. Listen to an entertaining DJ play music and enjoy an unforgettable evening, or celebrate a birthday, anniversary or another special occasion.

Explore San Diego’s vibrant marine life with a full-day snorkeling rental package, and plan a perfect day of fun on the coast with help from an experienced staff. Slip into the water with bright garibaldi fish and the ray-like shovelnose guitar fish, spot harmless leopard sharks then take in views of the city’s sea lion colonies from the ocean. First-time snorkelers can get tips on using the simple equipment, and all will enjoy the flexibility of an independent beach day in San Diego.

Sail along the San Diego Bay on this relaxing 1-hour cruise. While aboard, enjoy views of the city, as well as US naval vessels, the Star of India, and the Coronado Bridge. Catch sight of the Hotel del Coronado, and spot sea lions in their natural habitats. Along the 1-hour route, you can pick up a snack and drink at the snack bar (own expense), and relax as you cruise the water.

We are open for walk-ups on the weekends from 10:00 am to 5:00 pm and by reservation during the week (weather and unforeseen circumstances may change the hours). We are located on the water with the equipment all ready to go. No transporting of equipment necessary. We also supply the paddle, life jacket, and leash. With the beautiful Liberty Station park as our backdrop, we can help make your say on the water an easy and enjoyable experience.

We offer the only Paddle Board and Kayak Lessons and Rentals accessing the San Diego Bay National Wildlife Refuge.

We give the renters the ease of having us come to where they are and drop off the paddleboards and equipment then pick it up with no hassle in Mission Bay.

Take in the highlights of San Diego Bay during a sightseeing tour by amphibious vehicle. Travel on both land and water like a ‘duck tour,’ starting on the streets of Seaport Village and rolling down Harbor Drive alongside San Diego Bay. Transition into the water after departing Seaport Village. Cruise past the SeaWorld and Vacation Isle, experiencing the best of maritime San Diego on this fun and informative tour.

Take an evening cruise wining and dining aboard the ‘Spirit of San Diego,’ enjoying top-notch food and drink, plus sparkling skyline views during this San Diego dinner cruise. Dig into your included gourmet meal, accompanied by a complimentary cocktail and live on-board entertainment, as you cruise 25-miles worth of California’s beautiful coastline and gaze at the twinkling stars above. You can also upgrade your cruise to include an unlimited open bar for an additional price.

Enjoy a sailing adventure on a Catalina-style sailboat with just six people for a comfortable, semi-private experience (or, find five friends and fill up the whole boat). Sail in San Diego Harbor during the day. Sit back and relax to enjoy the water views while enjoying complimentary beer, soft drinks and snacks.

Go on a whale-watching expedition in San Diego on this 3-hour cruise. Get the scoop from a guide who studies the migratory patterns of grey whales as you keep a lookout for whales in the water. Board a 2-story yacht that gives you 360-degree views of the ocean. Plus, you're guaranteed to see whales or you get to ride again for free.

Watch the sun set over San Diego during an all-inclusive small-group cruise aboard a classic sailboat. Pass landmarks such as the Maritime Museum, Coronado Bridge, and USS Midway, and look for sea lions, dolphins, and other wildlife around San Diego Harbor on the 2.5-hour cruise.

This is an engaging and unique, small group tour, of San Diego's beautiful bay and coastal waterways. You'll be on a beautiful Catalina 34' Sailboat enjoying the fresh air and best that San Diego has to offer. On your adventure you'll see many types of sea life as well as learn a little about the many features of San Diego that truly make it "America's Finest City".

Make the most of a Sunday with a 2-hour brunch cruise through San Diego Bay. Capture prime views of the city skyline and harbor from a luxury yacht, and round out your morning bliss with bottomless mimosas and our new brunch menu with plated entrée service includes breakfast favorites, vegetarian options, and so much more. Indoor and Outdoor seating available please call Flagship Cruises & Events with seating preference. Listen to DJ tunes as the attentive crew constantly top off your glass. Shouldn’t weekends always be like this?

Set sail at one of the best times of day—sunset—during this San Diego Bay cruise. Board a comfortable sailing yacht and cruise along San Diego's coastline, taking in views of the scenic waterfront, military vessels, and historical landmarks. Catch sight of marine life and enjoy spectacular photo ops. Gorgeous sunset views and Wine makes this tour a great choice for couples or travelers celebrating a special occasion.

Cruise around San Diego bay aboard an authentic 1992 America’s Cup racing yacht and travel at twice the speed of the average sailboat. The Stars and Stripes USA-11 is one of the fastest and best known America’s Cup racing yachts. It was designed and built to be raced in San Diego, and has been restored to pristine condition. Take a turn at the helm and join in grinding the winches to raise and trim the sails.

A jet ski rental is the best way to see San Diego. This adrenaline filled experience will keep you excited while traveling at high rates of speed along the water.

Go sightseeing on the waters of San Diego Bay during a 2-hour brunch cruise that provides a delicious seated brunch accompanied by complimentary champagne. After enjoying a lavish plated brunch dish, stay at your private table or head outside to the open air for sunshine and sightseeing.

Sailing is an art, an adventure, and a great way to relax. Weather you're throwing a special event or you just want to get back to nature, the sea is the place to be. Sailing yacht 'Mojave' is the perfect place for birthday parties, anniversaries, honeymoons, family vacations, engagements, or just a tour of the bay with friends. The boat is clean, luxurious, and very spacious. Join me, Captain Liz, on a trip to see the icon sites of San Diego such as The USS Midway aircraft carrier, The Star of India, The Coronado Bridge, or just say hello to the sea lions. There are complementary snacks and beverages on board or you can bring whatever you would like. I can even make the party special for your event with balloons, party decorations or whatever your needs may be.